I'm making this a section for notes relating to the (internals of the) transmission. Basically, deviations from the BMW and Haynes Shop Manuals.
1. The cover does not necessarily need heated to remove. Gently tap on the output shaft, and use large screwdrivers and fulcrums to remove it.
2. When removing the shift claw mechanism, the manual instructs you to remove the breather sleeve. This was not needed (and may not be readily possible) for my bike (A 1991). The rod which the shift claw rides on is slightly thinner than the inside of the breather sleeve. Simply pop the circlips off, and slide the rod out.
3. The seals are pretty straightforward. I was able to grab most of them with a hook type seal puller. Be careful that the point of the hook is on the seal, and not another surface.
4. The input shaft rear seal is a pain to remove. Its tiny, and really wedged in there. In addition, it is inserted in the reverse of normal lip seals. The usual prying surface is harder to reach.