This is pretty much my routine when I get a "new" bike. I'm sure there are others here who have a different approach, but this is what works for me.
Step 1: Get a bottle of S100 Motorcycle cleaner. Most Harley dealers have it as well as a lot of other bike shops. Remove the tank and the knee panels and do a good clean of the bike, wheels wiring and inside the fairing. This will make all the rest of your work a lot cleaner. It's also a LOT more pleasant working on a clean bike.
Step 2: Check all the rubber bits, especially the Z-tube Crankcase breather hose and the rubber caps that go on the throttle bodies. Look inside the coolant filler for signs of mineral deposits. Check the radiator fan for free spinning. Check the brake pads for wear and order new ones if necessary. Check the air filter and the air box for rodent condos.
Step 3: Service the fuel tank internals. Clean out any old fuel deposits and the vibration damper goo if there is any. Replace the fuel filter(NAPA Gold 3032) and the old internal fuel lines with SAE J30 R10. Check that the fuel pump runs when power is applied to it.
Step 4: Get a can of Deoxit D5 and methodically go through every electrical connection with a light shot and working the connector on and off a couple times. Don't forget the big plugs on the Jetronic box, the ignition control(ICU), and the ABS if you bike has it or the multi-switches on the handlebars.
Step 5: Fluid change. Forks, brakes, engine, transmission, and final drive.
Step 6: Install the battery and check the electrical system; lights, horn, instrument cluster idiot lights. Does the starter work?
Step 7: With engine cold, check the valve clearances. Adjust if necessary. Install the fuel tank and start the engine. Balance the throttle bodies when the engine is warmed up.
Step 8: Once you have the engine running you can drain the coolant and if needed do a system flush with distilled water and cooling system flush. Refill with a 60:40 distilled water/coolant mix. Any long life coolant will work. Run the engine for 5-10 minutes until the cooling fan comes on. If it doesn't, it will need to be serviced.
Step 9: Adjust the clutch. Service the brake pads if necessary. Go through the bike checking all fasteners for proper torque. Do final detailing on paintwork.
Step 10: Ride.