Yes I used a the proper procedure and even took the bike to a BMW shop and they reinstalled them and had the same issue, I think that is why in the end EBC gave me new discs under guarantee.
With the new discs installed I have no pulsing but huge amounts of dragging. I put in a new piston and spring in the master cylinder to see if that helps, I will not know though until I get my new clutch cable and can ride again.